Premise Primates are important seed dispersers, especially for large-seeded (>1 cm long) tropical species in continuous and fragmented rainforests. Methods In three forest fragments within the Montes Azules Biosphere Reserve, southern Mexico, we investigated the effect of seed passage through the gut of howler monkeys (Alouatta pigra) on the germination rate and maximum germination (%) of native, large-seeded species. One group of howler monkeys, per fragment, was followed and fresh feces collected. Large seeds were removed to compare their germination success with non-ingested seeds of the same species collected underneath parent plants. Results Feces contained large seeds from seven tree species (Ampelocera hottlei, Castilla elastica, Dialium guianense, Garcinia intermedia, Pourouma bicolor, Spondias mombin, Trophis racemosa) and one liana species (Abuta panamensis). Except for G. intermedia, ingested seeds germinated significantly faster than non-ingested seeds, which had negligible germination. Ingested seeds of D. guianense, P. bicolor, S. mombin, T. racemosa, and A. panamensis had significantly greater germination, while G. intermedia had significantly lower germination and seed ingestion had no apparent effect for A. hottlei and C. elastica. Conclusions In general, seed ingestion by howler monkeys confers faster germination compared with non-ingested seeds. Faster germination reduces predation probabilities and increases seedling establishment in forest fragments. Primate dispersal services contribute to germination heterogeneity within plant populations of old-growth forest species and to their persistence in forest fragments.